Pairwise Align Protein

Sequence Manipulation Suite

Pairwise Align Protein

Pairwise Align Protein accepts two protein sequences and determines the optimal global alignment. Use Pairwise Align Protein to look for conserved sequence regions.

Paste sequence one (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.

Paste sequence two (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.

Use the following parameters to specify how alignments are scored.

Scoring matrix
Value for gaps preceding a sequence
Value for internal gaps
Value for gaps following a sequence