About GeneCorner
Contact us
Plasmid Collection
GREAT AT SMALL THINGS
Popular tools
EMBL to FASTA
Genbank to FASTA
Reverse Complement
Mutate for Digest
PCR Primer Stats
Protein Molecular Weight
Translate
Format conversion
Combine FASTA
EMBL to FASTA
EMBL Feature Extractor
EMBL Trans Extractor
Filter DNA
Filter Protein
GenBank to FASTA
GenBank Feature Extractor
GenBank Trans Extractor
One to Three
Range Extractor DNA
Range Extractor Protein
Reverse Complement
Split Codons
Split FASTA
Three to One
Window Extractor DNA
Window Extractor Protein
Sequence analysis
Codon Plot
Codon Usage
CpG Islands
DNA Molecular Weight
DNA Pattern Find
DNA Stats
Fuzzy Search DNA
Fuzzy Search Protein
Ident and Sim
Multi Rev Trans
Mutate for Digest
ORF Finder
Pairwise Align Codons
Pairwise Align DNA
Pairwise Align Protein
PCR Primer Stats
PCR Products
Protein GRAVY
Protein Isoelectric Point
Protein Molecular Weight
Protein Pattern Find
Protein Stats
Restriction Digest
Restriction Summary
Reverse Translate
Translate
Sequence figures
Color Align Conservation
Color Align Properties
Group DNA
Group Protein
Primer Map
Restriction Map
Translation Map
Random sequences
Mutate DNA
Mutate Protein
Random Coding DNA
Random DNA Sequence
Random DNA Regions
Random Protein Sequence
Random Protein Regions
Sample DNA
Sample Protein
Shuffle DNA
Shuffle Protein
Miscellaneous
IUPAC codes
Genetic codes
Codon table
Restriction enzymes
Tool descriptions
Acknowledgements
Reference
Sequence Manipulation Suite
Pairwise Align DNA
Pairwise Align DNA accepts two DNA sequences and determines the optimal global alignment. Use Pairwise Align DNA to look for conserved sequence regions.
Paste sequence one (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.
>sequence one gcgcgtgcgcggaaggagccaaggtgaagttgtagcagtgtgtcagaagaggtgcgtggc accatgctgtcccccgaggcggagcgggtgctgcggtacctggtcgaagtagaggagttg
Paste sequence two (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.
>sequence two gacttgtggaacctacttcctgaaaataaccttctgtcctccgagctctccgcacccgtg gatgacctgctcccgtacacagatgttgccacctggctggatgaatgtccgaatgaagcg
Use the following parameters to specify how alignments are scored.
Match value
6
5
4
3
2
1
0
-1
-2
-3
-4
-5
-6
Mismatch value
6
5
4
3
2
1
0
-1
-2
-3
-4
-5
-6
Value for gaps preceding a sequence
6
5
4
3
2
1
0
-1
-2
-3
-4
-5
-6
Value for internal gaps
6
5
4
3
2
1
0
-1
-2
-3
-4
-5
-6
Value for gaps following a sequence
6
5
4
3
2
1
0
-1
-2
-3
-4
-5
-6
Look for plasmids
Share plasmids
Secure materials
Plasmid toolbox
Other needs?
