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EMBL to FASTA
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Mutate for Digest
PCR Primer Stats
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Translate
Format conversion
Combine FASTA
EMBL to FASTA
EMBL Feature Extractor
EMBL Trans Extractor
Filter DNA
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GenBank to FASTA
GenBank Feature Extractor
GenBank Trans Extractor
One to Three
Range Extractor DNA
Range Extractor Protein
Reverse Complement
Split Codons
Split FASTA
Three to One
Window Extractor DNA
Window Extractor Protein
Sequence analysis
Codon Plot
Codon Usage
CpG Islands
DNA Molecular Weight
DNA Pattern Find
DNA Stats
Fuzzy Search DNA
Fuzzy Search Protein
Ident and Sim
Multi Rev Trans
Mutate for Digest
ORF Finder
Pairwise Align Codons
Pairwise Align DNA
Pairwise Align Protein
PCR Primer Stats
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Restriction Digest
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Reference
Sequence Manipulation Suite
Fuzzy Search DNA
Fuzzy Search DNA accepts a DNA sequence along with a query sequence and returns sites that are identical or similar to the query. You can use this program, for example, to find sequences that can be easily mutated into a useful restriction site.
Enter the sequence to search (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.
>test sequence gacttgtggaacctacttcctgaaaataaccttctgtcctccgagctctccgcacccgtg gatgacctgctcccgtacacagatgttgccacctggctggatgaatgtccgaatgaagcg tactgcct
Enter the query sequence into the text area below. Input limit is 30 characters.
Use the following parameters to specify how hits are scored, and to control which hits are returned.
Match value
5
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1
0
-1
-2
-3
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-5
Mismatch value
5
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2
1
0
-1
-2
-3
-4
-5
Gap value
5
4
3
2
1
0
-1
-2
-3
-4
-5
Report the the top
40
30
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5
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1
hits.
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