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EMBL to FASTA
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Combine FASTA
EMBL to FASTA
EMBL Feature Extractor
EMBL Trans Extractor
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GenBank to FASTA
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One to Three
Range Extractor DNA
Range Extractor Protein
Reverse Complement
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Window Extractor Protein
Sequence analysis
Codon Plot
Codon Usage
CpG Islands
DNA Molecular Weight
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Fuzzy Search DNA
Fuzzy Search Protein
Ident and Sim
Multi Rev Trans
Mutate for Digest
ORF Finder
Pairwise Align Codons
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Pairwise Align Protein
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Sequence Manipulation Suite
Fuzzy Search Protein
Fuzzy Search Protein accepts a protein sequence along with a query sequence and returns sites that are identical or similar to the query.
Enter the sequence to search (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.
>test sequence GKGKYGLEAFNGKFVQTDGQLAGTANEQTQFTLIFTSGHLVLRDNNGRHLGVDSGTRVLK SSKPGLTKANYFILEDSCPQGAFEFGGKYASLKQGEDVSFKLLVDEDIEDTETFQLEFVE TDKYAIRVCDPKKNSRDAKFWKTVAAGIQANGNSKDQTDCQFSVEYNGNDMHVRAPGGKY
Enter the query sequence into the text area below. Input limit is 30 characters.
Use the following parameters to specify how hits are scored, and to control which hits are returned.
Scoring matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Gap penalty
5
4
3
2
1
0
-1
-2
-3
-4
-5
Report the the top
40
30
20
10
9
8
7
6
5
4
3
2
1
hits.
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